8WDV: Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE

PDB ID: 8WDVDownload
MMDB ID: 243139
PDB Deposition Date: 2023/9/16
Updated in MMDB: 2024/05
Experimental Method:
electron microscopy
Resolution: 2.24  Å
Source Organism:
Similar Structures:
Biological Unit for 8WDV: 36-meric; determined by author and by software
Molecular Components in 8WDV
Label Count Molecule
Proteins (36 molecules)
1
Photosynthetic Reaction Center Cytochrome C Subunit
Molecule annotation
1
Reaction Center Protein L Chain
Molecule annotation
1
Reaction Center Protein M Chain
Molecule annotation
1
Photosynthetic Reaction Center H Subunit
Molecule annotation
9
Antenna Complex Alpha/beta Subunit
Molecule annotation
10
Antenna Complex Alpha/beta Subunit
Molecule annotation
6
Antenna Complex Alpha/beta Subunit
Molecule annotation
6
Antenna Complex Alpha/beta Subunit
Molecule annotation
1
Antenna Complex Alpha/beta Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (111 molecules)
1
4
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
2
1
MAGNESIUM IONMAGNESIUM ION
3
8
CALCIUM IONCALCIUM ION
4
1
(2S)-3-hydroxypropane-1,2-diyl dihexadecanoate(2S)-3-hydroxypropane-1,2-diyl dihexadecanoate
5
1
PALMITIC ACIDPALMITIC ACID
6
10
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
7
36
BACTERIOCHLOROPHYLL ABACTERIOCHLOROPHYLL A
8
2
BACTERIOPHEOPHYTIN ABACTERIOPHEOPHYTIN A
9
3
Ubiquinone-8Ubiquinone-8
10
1
FE (III) IONFE (III) ION
11
1
MENAQUINONE 8MENAQUINONE 8
12
17
SPIRILLOXANTHINSPIRILLOXANTHIN
13
5
CARDIOLIPINCARDIOLIPIN
14
2
LAURYL DIMETHYLAMINE-N-OXIDELAURYL DIMETHYLAMINE-N-OXIDE
15
19
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303