8WDA: Cryo-EM structure of the substrate-bound DppABCD complex

PDB ID: 8WDADownload
MMDB ID: 252478
PDB Deposition Date: 2023/9/14
Updated in MMDB: 2024/09
Experimental Method:
electron microscopy
Resolution: 3.26  Å
Source Organism:
Mycolicibacterium smegmatis MC2 155▼
Similar Structures:
Biological Unit for 8WDA: pentameric; determined by author and by software
Molecular Components in 8WDA
Label Count Molecule
Proteins (5 molecules)
1
Probable Periplasmic Dipeptide-binding Lipoprotein Dppa
Molecule annotation
1
Probable Dipeptide-transport Integral Membrane Protein ABC Transporter Dppb
Molecule annotation
1
Probable Dipeptide-transport Integral Membrane Protein ABC Transporter Dppc
Molecule annotation
1
Tetrapeptide
Molecule annotation
1
Probable Dipeptide-transport Atp-binding Protein ABC Transporter Dppd
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
PALMITIC ACIDPALMITIC ACID
2
1
(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303