8WD8: Cryo-EM structure of TtdAgo-guide DNA-target DNA complex

PDB ID: 8WD8Download
MMDB ID: 242176
PDB Deposition Date: 2023/9/14
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 2.9  Å
Source Organism:
Thermococcus thioreducens▼
Similar Structures:
Biological Unit for 8WD8: hexameric; determined by author and by software
Molecular Components in 8WD8
Label Count Molecule
Proteins (2 molecules)
2
Argonaute Family Protein
Molecule annotation
Nucleotides(4 molecules)
2
Target DNA
Molecule annotation
2
Guide DNA
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
ZINC IONZINC ION
2
6
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303