National Center for
Biotechnology Information

8WAZ: De novo transcribing complex 16 (TC16), the early elongation complex with Pol II positioned 16nt downstream of TSS

PDB ID:

MMDB ID:

239582

PDB Deposition Date:

2023/9/8

Updated in MMDB:

2023/12

Experimental Method:

electron microscopy

Resolution:

2.76 Å

Source Organism:

Amanita phalloides▼

Similar Structures:

Biological Unit for 8WAZ: octadecameric; determined by author

Molecular Components in 8WAZ
Label	Count	Molecule
Proteins (15 molecules)
N	1	Alpha-amanitin
S	1	General Transcription Factor IIF Subunit 1
T	1	General Transcription Factor IIF Subunit 2
o	1	DNA-directed RNA Polymerase Subunit
p	1	DNA-directed RNA Polymerase Subunit Beta
q	1	DNA-directed RNA Polymerase II Subunit Rpb3
r	1	DNA-directed RNA Polymerase II Subunit Rpb4
s	1	DNA-directed RNA Polymerase II Subunit E
t	1	DNA-directed RNA Polymerase II Subunit F
u	1	DNA-directed RNA Polymerase II Subunit Rpb7
v	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
w	1	DNA-directed RNA Polymerase II Subunit Rpb9
x	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
y	1	DNA-directed RNA Polymerase II Subunit Rpb11-a
z	1	Rpb12
Nucleotides(3 molecules)
X	1	Non-template DNA
Y	1	Template DNA
Z	1	RNA
Chemicals and Non-standard biopolymers (10 molecules)
1	8	ZINC ION
2	1	MAGNESIUM ION
3	1	[[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

* Click molecule labels to explore molecular sequence information.

Citing MMDB