8W9E: Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2

PDB ID: 8W9EDownload
MMDB ID: 247077
PDB Deposition Date: 2023/9/5
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 3.6  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 8W9E: heptadecameric; determined by author and by software
Molecular Components in 8W9E
Label Count Molecule
Proteins (15 molecules)
1
Transcriptional Regulatory Protein Sin3
Molecule annotation
2
Transcriptional Regulatory Protein Rco1
Molecule annotation
1
Histone Deacetylase Rpd3
Molecule annotation
3
Chromatin Modification-related Protein Eaf3
Molecule annotation
2
Histone H3.1
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1-b/e
Molecule annotation
2
Histone H2B Type 1-K
Molecule annotation
Nucleotides(2 molecules)
1
5-dna
Molecule annotation
1
3-dna
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
7
ZINC IONZINC ION
2
1
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303