8W6X: Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state

PDB ID: 8W6XDownload
MMDB ID: 235560
PDB Deposition Date: 2023/8/30
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction; neutron diffraction
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 8W6X: dimeric; determined by author and by software (PISA)
Molecular Components in 8W6X
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nife] Hydrogenase Large Subunit
Molecule annotation
1
Periplasmic [nife] Hydrogenase Small Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
1
formyl[bis(hydrocyanato-1kappaC)]ironnickel(Fe-Ni)formyl[bis(hydrocyanato-1kappaC)]ironnickel(Fe-Ni)
2
9
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
3
1
HYDROXIDE IONHYDROXIDE ION
4
1
MAGNESIUM IONMAGNESIUM ION
5
1
CHLORIDE IONCHLORIDE ION
6
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
7
1
FE3-S4 CLUSTERFE3-S4 CLUSTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303