8VZM: DNA Ligase 1 captured with pre-step 3 ligation at the rA:T nicksite

PDB ID: 8VZMDownload
MMDB ID: 247342
PDB Deposition Date: 2024/2/11
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 2.51  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8VZM: tetrameric; determined by author and by software (PISA)
Molecular Components in 8VZM
Label Count Molecule
Protein (1 molecule)
1
DNA Ligase 1
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*tp*cp*cp*gp*ap*cp*cp*ap*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*cp*gp*gp*ap*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
B
1
DNA/RNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-R(P*A)-3')
1
1
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303