8VYF: SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement

PDB ID: 8VYFDownload
MMDB ID: 244741
PDB Deposition Date: 2024/2/8
Updated in MMDB: 2024/04
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8VYF: pentameric; determined by author
Molecular Components in 8VYF
Label Count Molecule
Proteins (5 molecules)
1
Spike Glycoprotein
Molecule annotation
1
S2l20 Heavy Chain
Molecule annotation
1
S2l20 Light Chain
Molecule annotation
1
S2x303 Heavy Chain
Molecule annotation
1
S2x303 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
11
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303