8VIF: SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, local refinement

PDB ID: 8VIFDownload
MMDB ID: 250188
PDB Deposition Date: 2024/1/4
Updated in MMDB: 2024/07
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8VIF: trimeric; determined by author
Molecular Components in 8VIF
Label Count Molecule
Proteins (3 molecules)
1
Sc27 FAB Heavy Chain
Molecule annotation
1
Sc27 FAB Light Chain
Molecule annotation
1
Spike Glycoprotein
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303