8VDT: DNA Ligase 1 with nick DNA 3'rA:T

PDB ID: 8VDTDownload
MMDB ID: 247334
PDB Deposition Date: 2023/12/17
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 2.78  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8VDT: trimeric; determined by author and by software (PISA)
Molecular Components in 8VDT
Label Count Molecule
Protein (1 molecule)
1
DNA Ligase 1
Molecule annotation
Nucleotides(2 molecules)
1
Dna/rna (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*t)-r(p*a)-d(p*gp*tp*cp*gp*gp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*tp*cp*cp*gp*ap*cp*tp*ap*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303