8VA3: Crystal structure of CapGH3b enzyme retrieved from capybara gut metagenome

PDB ID: 8VA3Download
MMDB ID: 253925
PDB Deposition Date: 2023/12/11
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.8  Å
Source Organism:
Similar Structures:
Biological Unit for 8VA3: dimeric; determined by author and by software (PISA)
Molecular Components in 8VA3
Label Count Molecule
Proteins (2 molecules)
2
Glycoside Hydrolase Family 3
Molecule annotation
Chemicals and Non-standard biopolymers (34 molecules)
1
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
2
3
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
3
24
GLYCEROLGLYCEROL
4
2
MAGNESIUM IONMAGNESIUM ION
5
1
SODIUM IONSODIUM ION
6
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
7
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303