8V9Q: Crystal structure of mGalNAc-T1 in complex with the mucin glycopeptide Muc5AC-13, Mn2+, and UDP

PDB ID: 8V9QDownload
MMDB ID: 244127
PDB Deposition Date: 2023/12/8
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 2.29  Å
Source Organism:
Mus musculus▼
Similar Structures:
Biological Unit for 8V9Q: pentameric; determined by author and by software
Molecular Components in 8V9Q
Label Count Molecule
Proteins (5 molecules)
2
Polypeptide N-acetylgalactosaminyltransferase 1 Soluble Form
Molecule annotation
3
Mucin-5ac
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
6
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
2
alpha-D-mannopyranosealpha-D-mannopyranose
4
2
URIDINE-5'-DIPHOSPHATEURIDINE-5'-DIPHOSPHATE
5
2
GLYCEROLGLYCEROL
6
1
SUCCINIC ACIDSUCCINIC ACID
7
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
8
2
MANGANESE (II) IONMANGANESE (II) ION
9
3
2-acetamido-2-deoxy-alpha-D-galactopyranose2-acetamido-2-deoxy-alpha-D-galactopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303