8V7F: Human DNA polymerase eta-DNA-araC-ended primer-dAMPNPP ternary complex with Mn2+

PDB ID: 8V7FDownload
MMDB ID: 247061
PDB Deposition Date: 2023/12/4
Updated in MMDB: 2025/06
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8V7F: trimeric; determined by author and by software (PISA)
Molecular Components in 8V7F
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase ETA
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*ap*tp*gp*ap*tp*gp*ap*cp*gp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*ap*gp*cp*gp*tp*cp*ap*t*())-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303