8V07: Crystal structure of mouse PLD3 co-crystallized with 5'Pi-ssDNA for 30 days

PDB ID: 8V07Download
MMDB ID: 244122
PDB Deposition Date: 2023/11/17
Updated in MMDB: 2024/06
Experimental Method:
x-ray diffraction
Resolution: 1.99  Å
Source Organism:
Similar Structures:
Biological Unit for 8V07: dimeric; determined by author and by software (PISA)
Molecular Components in 8V07
Label Count Molecule
Proteins (2 molecules)
2
5'-3' Exonuclease Pld3
(Gene symbol: Pld3)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
7
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
3
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
CITRIC ACIDCITRIC ACID
5
3
GLYCEROLGLYCEROL
6
1
ACETYL GROUPACETYL GROUP
7
2
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303