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8UU6: Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

PDB ID:

8UU6 Download

MMDB ID:

243372

PDB Deposition Date:

2023/10/31

Updated in MMDB:

2024/05

Experimental Method:

electron microscopy

Resolution:

3.3 Å

Source Organism:

Escherichia phage T4▼

Taxonomy	Molecule
Escherichia phage T4	w
Listeria innocua	a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, A, B, C, D, E, F, G, L, M, N, O, P, Q, R , S, T, U, V, W, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8
Escherichia coli	x

Similar Structures:

Biological Unit for 8UU6: 51-meric; determined by author

Molecular Components in 8UU6
Label	Count	Molecule
Proteins (46 molecules)
b	1	Small Ribosomal Subunit Protein US2
c	1	Small Ribosomal Subunit Protein US3
d	1	Small Ribosomal Subunit Protein US4
e	1	Small Ribosomal Subunit Protein US5
f	1	Small Ribosomal Subunit Protein BS6
g	1	Small Ribosomal Subunit Protein US7
h	1	Small Ribosomal Subunit Protein US8
i	1	Small Ribosomal Subunit Protein US9
j	1	Small Ribosomal Subunit Protein Us10
k	1	Small Ribosomal Subunit Protein Us11
l	1	Small Ribosomal Subunit Protein Us12
m	1	Small Ribosomal Subunit Protein Us13
n	1	Small Ribosomal Subunit Protein Us14
o	1	Small Ribosomal Subunit Protein Us15
p	1	Small Ribosomal Subunit Protein Bs16
q	1	Small Ribosomal Subunit Protein Us17
r	1	Small Ribosomal Subunit Protein Bs18
s	1	Small Ribosomal Subunit Protein Us19
t	1	Small Ribosomal Subunit Protein Bs20
C	1	Large Ribosomal Subunit Protein UL2
D	1	Large Ribosomal Subunit Protein UL3
E	1	Large Ribosomal Subunit Protein UL4
F	1	Large Ribosomal Subunit Protein UL5
G	1	Large Ribosomal Subunit Protein UL6
L	1	Large Ribosomal Subunit Protein Ul13
M	1	Large Ribosomal Subunit Protein Ul14
N	1	Large Ribosomal Subunit Protein Ul15
O	1	Large Ribosomal Subunit Protein Ul16
P	1	Large Ribosomal Subunit Protein Bl17
Q	1	Large Ribosomal Subunit Protein Ul18
R	1	Large Ribosomal Subunit Protein Bl19
S	1	Large Ribosomal Subunit Protein Bl20
T	1	Large Ribosomal Subunit Protein Bl21
U	1	Large Ribosomal Subunit Protein Ul22
V	1	Large Ribosomal Subunit Protein Ul23
W	1	Large Ribosomal Subunit Protein Ul24
Y	1	Large Ribosomal Subunit Protein Bl27
Z	1	Large Ribosomal Subunit Protein Bl28
1	1	Large Ribosomal Subunit Protein Ul29
2	1	Large Ribosomal Subunit Protein Ul30
3	1	Large Ribosomal Subunit Protein Bl31b
4	1	Large Ribosomal Subunit Protein Bl32
5	1	Large Ribosomal Subunit Protein Bl33
6	1	Large Ribosomal Subunit Protein Bl34
7	1	Large Ribosomal Subunit Protein Bl35
8	1	Large Ribosomal Subunit Protein Bl36
Nucleotides(5 molecules)
a	1	16S Ribosomal RNA
x	1	P/E Hybrid State Phenylalanine tRNA
w	1	F-stop mRNA
A	1	23S Ribosomal RNA
B	1	5S Ribosomal RNA
Chemicals and Non-standard biopolymers (103 molecules)
1	98	MAGNESIUM ION
2	4	ZINC ION
3	1	POTASSIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303