8UOQ: Composite map of PIC_delta_TFIIK form2

PDB ID: 8UOQDownload
MMDB ID: 253921
PDB Deposition Date: 2023/10/20
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.8  Å
Source Organism:
Similar Structures:
Biological Unit for 8UOQ: 30-meric; determined by author and by software
Molecular Components in 8UOQ
Label Count Molecule
Proteins (28 molecules)
1
Transcription Initiation Factor IIB
(Gene symbol: SUA7)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb1
(Gene symbol: RPO21)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
(Gene symbol: RPB2)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
(Gene symbol: RPB3)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
(Gene symbol: RPB5)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
(Gene symbol: RPO26)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
(Gene symbol: RPB8)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
(Gene symbol: RPB9)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
(Gene symbol: RPB10)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
(Gene symbol: RPB11)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
(Gene symbol: RPC10)
Molecule annotation
1
Transcription Initiation Factor IIF Subunit Alpha
(Gene symbol: TFG1)
Molecule annotation
1
Transcription Initiation Factor IIF Subunit Beta
(Gene symbol: TFG2)
Molecule annotation
1
Transcription Elongation Factor S-ii
(Gene symbol: DST1)
Molecule annotation
1
Tata-box-binding Protein
(Gene symbol: SPT15)
Molecule annotation
1
Transcription Initiation Factor IIA Large Subunit
(Gene symbol: TOA1)
Molecule annotation
1
Transcription Initiation Factor IIA Subunit 2
(Gene symbol: TOA2)
Molecule annotation
1
Transcription Initiation Factor IIE Subunit Alpha
(Gene symbol: TFA1)
Molecule annotation
1
Transcription Initiation Factor IIE Subunit Beta
(Gene symbol: TFA2)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb4
(Gene symbol: RPB4)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb7
(Gene symbol: RPB7)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Helicase Subunit Xpd/rad3
(Gene symbol: RAD3)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb1
(Gene symbol: TFB1)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb4
(Gene symbol: TFB4)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Ssl1
(Gene symbol: SSL1)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Helicase Subunit XPB
(Gene symbol: SSL2)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb2
(Gene symbol: TFB2)
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Subunit Tfb5
(Gene symbol: TFB5)
Molecule annotation
Nucleotides(2 molecules)
1
Non-template Strand
Molecule annotation
1
Template Strand
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
15
ZINC IONZINC ION
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303