8UGL: High resolution in-situ structure of complex IV in respiratory supercomplex

PDB ID: 8UGLDownload
MMDB ID: 248601
PDB Deposition Date: 2023/10/5
Updated in MMDB: 2024/07
Experimental Method:
electron microscopy
Resolution: 3  Å
Source Organism:
Similar Structures:
Biological Unit for 8UGL: 14-meric; determined by author and by software
Molecular Components in 8UGL
Label Count Molecule
Proteins (14 molecules)
1
Cytochrome C Oxidase Subunit 1
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
Molecule annotation
1
Cytochrome C Oxidase Subunit 3
Molecule annotation
1
Cytochrome C Oxidase Subunit 4
Molecule annotation
1
Cytochrome C Oxidase Subunit 5A, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 5B, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 6A2
Molecule annotation
1
Cytochrome C Oxidase Subunit 6B1
Molecule annotation
1
Cytochrome C Oxidase Subunit 6C
Molecule annotation
1
Cytochrome C Oxidase Subunit 7a1, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 7B
Molecule annotation
1
Cytochrome C Oxidase Subunit 7C, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 8
Molecule annotation
1
Cytochrome C Oxidase Subunit Ndufa4
Molecule annotation
Chemicals and Non-standard biopolymers (29 molecules)
1
15
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
2
2
HEME-AHEME-A
3
1
COPPER (II) IONCOPPER (II) ION
4
1
MAGNESIUM IONMAGNESIUM ION
5
1
SODIUM IONSODIUM ION
6
3
CARDIOLIPINCARDIOLIPIN
7
1
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
8
1
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
9
1
ZINC IONZINC ION
10
2
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303