8UB4: Cdc48-Shp1 unfolding native substrate, consensus structure

PDB ID: 8UB4Download
MMDB ID: 254564
PDB Deposition Date: 2023/9/22
Updated in MMDB: 2024/11
Experimental Method:
electron microscopy
Resolution: 2.9  Å
Source Organism:
Similar Structures:
Biological Unit for 8UB4: decameric; determined by author
Molecular Components in 8UB4
Label Count Molecule
Proteins (10 molecules)
6
Cell Division Control Protein 48
(Gene symbol: CDC48)
Molecule annotation
1
Substrate
Molecule annotation
3
UBX Domain-containing Protein 1
(Gene symbol: SHP1)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
8
[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium
2
8
MAGNESIUM IONMAGNESIUM ION
3
2
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303