8U9Q: Cdc48-Shp1 unfolding native substrate, Class 6

PDB ID: 8U9QDownload
MMDB ID: 254556
PDB Deposition Date: 2023/9/19
Updated in MMDB: 2024/11
Experimental Method:
electron microscopy
Resolution: 4.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8U9Q: heptameric; determined by author
Molecular Components in 8U9Q
Label Count Molecule
Proteins (7 molecules)
6
Cell Division Control Protein 48
(Gene symbol: CDC48)
Molecule annotation
1
Substrate
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
6
[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium
2
6
MAGNESIUM IONMAGNESIUM ION
3
3
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303