8U5J: Structure of Mango III variant aptamer bound to T01-07M-B

PDB ID: 8U5JDownload
MMDB ID: 244704
PDB Deposition Date: 2023/9/12
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Biological Unit for 8U5J: monomeric; determined by author
Molecular Components in 8U5J
Label Count Molecule
Nucleotide(1 molecule)
1
Mango III Variant
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
POTASSIUM IONPOTASSIUM ION
2
2
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
3
1
2-[(E)-(1,7-dimethylquinolin-4(1H)-ylidene)methyl]-3-{2,16-dioxo-20-[(3aR,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium2-[(E)-(1,7-dimethylquinolin-4(1H)-ylidene)methyl]-3-{2,16-dioxo-20-[(3aR,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303