8U13: Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 1)

PDB ID: 8U13Download
MMDB ID: 241493
PDB Deposition Date: 2023/8/30
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 3.8  Å
Source Organism:
Similar Structures:
Biological Unit for 8U13: undecameric; determined by author
Molecular Components in 8U13
Label Count Molecule
Proteins (9 molecules)
2
Histone H3.1
(Gene symbol: H3C1)
Molecule annotation
2
Histone H4
(Gene symbol: H4C9)
Molecule annotation
2
Histone H2B Type 1-c/e/f/g/i
(Gene symbol: H2BC8)
Molecule annotation
1
E3 Ubiquitin-protein Ligase Rnf168
(Gene symbol: RNF168)
Molecule annotation
2
Histone H2A Type 1-b/e
(Gene symbol: H2AC8)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (147-mer)
Molecule annotation
1
DNA (146-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303