8U0P: Synaptic complex of human DNA polymerase Lambda DL variant engaged on a noncomplementary DNA double-strand break

PDB ID: 8U0PDownload
MMDB ID: 244095
PDB Deposition Date: 2023/8/29
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8U0P: tetrameric; determined by author and by software (PISA)
Molecular Components in 8U0P
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*gp*gp*cp*ap*gp*tp*ap*cp*tp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
1
SODIUM IONSODIUM ION
3
4
CHLORIDE IONCHLORIDE ION
4
1
SULFATE IONSULFATE ION
5
1
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303