8TG4: tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with ADP-ribose-2"-phosphate and 2'-OH RNA

PDB ID: 8TG4Download
MMDB ID: 238318
PDB Deposition Date: 2023/7/12
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.37  Å
Source Organism:
Aeropyrum pernix▼
Similar Structures:
Biological Unit for 8TG4: dimeric; determined by author and by software
Molecular Components in 8TG4
Label Count Molecule
Protein (1 molecule)
1
Probable RNA 2'-phosphotransferase
Molecule annotation
Nucleotide(1 molecule)
1
RNA (5'-r(*up*gp*up*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
NITRATE IONNITRATE ION
2
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
1
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-3,5-dihydroxy-4-(phosphonooxy)oxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-3,5-dihydroxy-4-(phosphonooxy)oxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)
4
4
POTASSIUM IONPOTASSIUM ION
5
2
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303