8TF9: Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-IP7, produced upon myo-IP6 phosphorylation by TvI

PDB ID: 8TF9Download
MMDB ID: 238600
PDB Deposition Date: 2023/7/9
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.55  Å
Source Organism:
Similar Structures:
Biological Unit for 8TF9: monomeric; determined by author and by software
Molecular Components in 8TF9
Label Count Molecule
Protein (1 molecule)
1
Diphosphoinositol Polyphosphate Phosphohydrolase 1
(Gene symbol: NUDT3)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate
2
3
MAGNESIUM IONMAGNESIUM ION
3
2
CHLORIDE IONCHLORIDE ION
4
1
FLUORIDE IONFLUORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303