8TB4: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5)

PDB ID: 8TB4Download
MMDB ID: 240280
PDB Deposition Date: 2023/6/28
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 3.11  Å
Source Organism:
Biological Unit for 8TB4: tetrameric; determined by author
Molecular Components in 8TB4
Label Count Molecule
Nucleotides(4 molecules)
1
DNA (5'-d(*gp*ap*gp*cp*ap*gp*ap*cp*cp*tp*gp*ap*cp*gp*ap*cp*ap*ap*tp*tp*a)-3')
Molecule annotation
1
DNA (5'-d(p*cp*gp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*tp*ap*ap*tp*tp*gp*t*(dap))-3')
Molecule annotation
1
DNA (5'-d(p*gp*gp*tp*cp*tp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
2
3
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303