8TB3: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)

PDB ID: 8TB3Download
MMDB ID: 240279
PDB Deposition Date: 2023/6/28
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 3  Å
Source Organism:
Biological Unit for 8TB3: tetrameric; determined by author
Molecular Components in 8TB3
Label Count Molecule
Nucleotides(4 molecules)
1
DNA (5'-d(*gp*ap*cp*ap*ap*tp*tp*gp*cp*tp*gp*ap*cp*gp*ap*cp*ap*cp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(p*cp*gp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*tp*gp*ap*gp*tp*gp*t)-3')
Molecule annotation
1
DNA (5'-d(p*gp*cp*ap*ap*tp*tp*g*(dap))-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303