8TA9: Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x6)

PDB ID: 8TA9Download
MMDB ID: 240274
PDB Deposition Date: 2023/6/27
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Biological Unit for 8TA9: tetrameric; determined by author
Molecular Components in 8TA9
Label Count Molecule
Nucleotides(4 molecules)
1
DNA (5'-d(*gp*ap*gp*ap*ap*tp*tp*cp*cp*tp*gp*ap*cp*gp*gp*ap*ap*cp*tp*cp*a*(dap))-3')
Molecule annotation
1
DNA (5'-d(p*cp*cp*gp*tp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*tp*gp*ap*gp*tp*t)-3')
Molecule annotation
1
DNA (5'-d(p*gp*gp*ap*ap*tp*tp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
COBALT (II) IONCOBALT (II) ION
2
1
6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303