8SV4: 7-Deazapurines and 5-Halogenpyrimidine DNA duplex

PDB ID: 8SV4Download
MMDB ID: 236471
PDB Deposition Date: 2023/5/15
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8SV4: trimeric; determined by author
Molecular Components in 8SV4
Label Count Molecule
Protein (1 molecule)
1
Ribonuclease H
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
BC
2
DNA (5'-D(*(B86)P*(7DD)P*(B86)P*(7DD)P*(7DA)P*(7DA)P*(UCL)P*(UCL)P*(B86)P*(7DD)P*(B86)P*(7DD))-3')
1
1
2-[2-(2-ethoxyethoxy)ethoxy]ethanol2-[2-(2-ethoxyethoxy)ethoxy]ethanol
2
2
ACETATE IONACETATE ION
3
2
SULFATE IONSULFATE ION
4
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303