8SQJ: SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode

PDB ID: 8SQJDownload
MMDB ID: 238862
PDB Deposition Date: 2023/5/4
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.06  Å
Source Organism:
Severe acute respiratory syndrome coronavirus▼
Similar Structures:
Biological Unit for 8SQJ: octameric; determined by author
Molecular Components in 8SQJ
Label Count Molecule
Proteins (5 molecules)
1
RNA-directed RNA Polymerase
Molecule annotation
2
Non-structural Protein 8
Molecule annotation
1
Non-structural Protein 7
Molecule annotation
1
Non-structural Protein 9
Molecule annotation
Nucleotides(3 molecules)
1
Primer RNA
Molecule annotation
1
Template RNA
Molecule annotation
1
Sars-cov-2 5' UTR
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosine5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosine
2
1
MAGNESIUM IONMAGNESIUM ION
3
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303