8SQ9: SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate

PDB ID: 8SQ9Download
MMDB ID: 238861
PDB Deposition Date: 2023/5/4
Updated in MMDB: 2023/11
Experimental Method:
electron microscopy
Resolution: 2.9  Å
Source Organism:
Severe acute respiratory syndrome coronavirus▼
Similar Structures:
Biological Unit for 8SQ9: heptameric; determined by author
Molecular Components in 8SQ9
Label Count Molecule
Proteins (5 molecules)
1
RNA-directed RNA Polymerase
Molecule annotation
2
Non-structural Protein 8
Molecule annotation
1
Non-structural Protein 7
Molecule annotation
1
Non-structural Protein 9
Molecule annotation
Nucleotides(2 molecules)
1
Primer RNA
Molecule annotation
1
Template RNA
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
ZINC IONZINC ION
2
4
MAGNESIUM IONMAGNESIUM ION
3
2
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303