8SOS: Human CD1d presenting sphingomyelin C24:1 in complex with VHH nanobody 1D17

PDB ID: 8SOSDownload
MMDB ID: 239835
PDB Deposition Date: 2023/4/29
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.33  Å
Source Organism:
Lama glama▼
Similar Structures:
Biological Unit for 8SOS: hexameric; determined by author and by software (PISA)
Molecular Components in 8SOS
Label Count Molecule
Proteins (6 molecules)
2
Antigen-presenting Glycoprotein Cd1d
Molecule annotation
2
Beta-2-microglobulin
Molecule annotation
2
Nanobody VHH Id17
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
sphingomyelinsphingomyelin
2
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303