8S84: KOD-H4 DNA polymerase mutant in a ternary complex with DNA/DNA and non-hydrolyzable triphosphate

PDB ID: 8S84Download
MMDB ID: 254879
PDB Deposition Date: 2024/3/5
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.35  Å
Source Organism:
Thermococcus kodakarensis KOD1▼
Similar Structures:
Biological Unit for 8S84: trimeric; determined by author and by software
Molecular Components in 8S84
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*cp*ap*cp*a*(xg4))-3')
Molecule annotation
1
DNA (5'-d(p*ap*cp*tp*gp*tp*gp*gp*cp*cp*gp*tp*gp*gp*tp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
5
MAGNESIUM IONMAGNESIUM ION
2
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine
3
1
MANGANESE (II) IONMANGANESE (II) ION
4
1
IMIDAZOLEIMIDAZOLE
5
2
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303