8S3D: Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2-amino-2-hydroxyglutarate (reaction intermediate) and NAD

PDB ID: 8S3DDownload
MMDB ID: 251705
PDB Deposition Date: 2024/2/19
Updated in MMDB: 2024/09
Experimental Method:
x-ray diffraction
Resolution: 1.65  Å
Source Organism:
Similar Structures:
Biological Unit for 8S3D: hexameric; determined by author
Molecular Components in 8S3D
Label Count Molecule
Proteins (6 molecules)
6
Glutamate Dehydrogenase
Molecule annotation
Chemicals and Non-standard biopolymers (70 molecules)
1
6
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
29
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
8
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
6
(2S)-2-azanyl-2-oxidanyl-pentanedioic acid(2S)-2-azanyl-2-oxidanyl-pentanedioic acid
5
5
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
6
6
CALCIUM IONCALCIUM ION
7
3
SODIUM IONSODIUM ION
8
6
GLYCINEGLYCINE
9
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303