8S1U: YlmH bound to stalled 50S subunits with RqcH and PtRNA

PDB ID: 8S1UDownload
MMDB ID: 248187
PDB Deposition Date: 2024/2/16
Updated in MMDB: 2024/08
Experimental Method:
electron microscopy
Resolution: 3.4  Å
Source Organism:
Similar Structures:
Biological Unit for 8S1U: 33-meric; determined by author
Molecular Components in 8S1U
Label Count Molecule
Proteins (29 molecules)
1
50S Ribosomal Protein L32
(Gene symbol: rpmF)
Molecule annotation
1
50S Ribosomal Protein L33 1
(Gene symbol: rpmGA)
Molecule annotation
1
50S Ribosomal Protein L34
(Gene symbol: rpmH)
Molecule annotation
1
50S Ribosomal Protein L35
(Gene symbol: rpmI)
Molecule annotation
1
50S Ribosomal Protein L36
(Gene symbol: rpmJ)
Molecule annotation
1
50S Ribosomal Protein L31
(Gene symbol: rpmEA)
Molecule annotation
1
50S Ribosomal Protein L2
(Gene symbol: rplB)
Molecule annotation
1
50S Ribosomal Protein L3
(Gene symbol: rplC)
Molecule annotation
1
50S Ribosomal Protein L4
(Gene symbol: rplD)
Molecule annotation
1
50S Ribosomal Protein L5
(Gene symbol: rplE)
Molecule annotation
1
Large Ribosomal Subunit Protein UL6
(Gene symbol: rplF)
Molecule annotation
1
50S Ribosomal Protein L13
(Gene symbol: rplM)
Molecule annotation
1
50S Ribosomal Protein L14
(Gene symbol: rplNA)
Molecule annotation
1
50S Ribosomal Protein L15
(Gene symbol: rplO)
Molecule annotation
1
50S Ribosomal Protein L16
(Gene symbol: rplP)
Molecule annotation
1
50S Ribosomal Protein L17
(Gene symbol: rplQ)
Molecule annotation
1
50S Ribosomal Protein L18
(Gene symbol: rplR)
Molecule annotation
1
50S Ribosomal Protein L19
(Gene symbol: rplS)
Molecule annotation
1
Large Ribosomal Subunit Protein Bl20
(Gene symbol: rplT)
Molecule annotation
1
50S Ribosomal Protein L21
(Gene symbol: rplU)
Molecule annotation
1
50S Ribosomal Protein L22
(Gene symbol: rplV)
Molecule annotation
1
Large Ribosomal Subunit Protein Ul23
(Gene symbol: rplW)
Molecule annotation
1
50S Ribosomal Protein L24
(Gene symbol: rplX)
Molecule annotation
1
Putative RNA-binding Protein Ylmh
(Gene symbol: ylmH)
Molecule annotation
1
Large Ribosomal Subunit Protein Bl27
(Gene symbol: rpmA)
Molecule annotation
1
50S Ribosomal Protein L28
(Gene symbol: rpmB)
Molecule annotation
1
50S Ribosomal Protein L29
(Gene symbol: rpmC)
Molecule annotation
1
Large Ribosomal Subunit Protein Ul30
(Gene symbol: rpmD)
Molecule annotation
1
Rqc2 Homolog Rqch
Molecule annotation
Nucleotides(4 molecules)
2
P-trna
Molecule annotation
1
5S rRNA
Molecule annotation
1
23S rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
15
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303