8RJA: Crystal structure of the F420-reducing formylmethanofuran dehydrogenase complex from the ethanotroph Candidatus Ethanoperedens thermophilum

PDB ID: 8RJADownload
MMDB ID: 252947
PDB Deposition Date: 2023/12/20
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.97  Å
Source Organism:
Similar Structures:
Biological Unit for 8RJA: hexameric; determined by author and by software (PISA)
Molecular Components in 8RJA
Label Count Molecule
Proteins (6 molecules)
1
Formylmethanofuran Dehydrogenase Subunit a
Molecule annotation
1
Formylmethanofuran Dehydrogenase Subunit B
Molecule annotation
1
Formylmethanofuran Dehydrogenase
Molecule annotation
1
Formylmethanofuran Dehydrogenase Subunit D
Molecule annotation
1
Coenzyme F420 Hydrogenase/dehydrogenase, Beta Subunit C Terminus
Molecule annotation
1
Nad(p)h-quinone Oxidoreductase Subunit I, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (31 molecules)
1
2
ZINC IONZINC ION
2
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
3
GLYCEROLGLYCEROL
4
3
ACETATE IONACETATE ION
5
2
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
6
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
7
3
CHLORIDE IONCHLORIDE ION
8
6
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
9
1
TUNGSTEN IONTUNGSTEN ION
10
2
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
11
1
HYDROSULFURIC ACIDHYDROSULFURIC ACID
12
1
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
13
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303