8RIU: Crystal structure of the F420-reducing carbon monoxide dehydrogenase component from the ethanotroph Candidatus Ethanoperedens thermophilum

PDB ID: 8RIUDownload
MMDB ID: 252946
PDB Deposition Date: 2023/12/19
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.89  Å
Source Organism:
Similar Structures:
Biological Unit for 8RIU: hexameric; determined by author and by software (PISA)
Molecular Components in 8RIU
Label Count Molecule
Proteins (6 molecules)
2
Acetyl-coa Decarbonylase/synthase Complex Subunit Alpha
Molecule annotation
2
Coenzyme F420 Hydrogenase/dehydrogenase, Beta Subunit C Terminus
Molecule annotation
2
Acetyl-coa Decarbonylase/synthase Complex Subunit Epsilon
Molecule annotation
Chemicals and Non-standard biopolymers (47 molecules)
1
15
GLYCEROLGLYCEROL
2
11
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
13
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
4
2
FE(4)-NI(1)-S(4) CLUSTERFE(4)-NI(1)-S(4) CLUSTER
5
2
POTASSIUM IONPOTASSIUM ION
6
2
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
7
1
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
8
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303