8RFR: Low pH (5.5) nitrite-bound MSOX movie series dataset 7 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [4.27 MGy] - NO/water intermediate

PDB ID: 8RFRDownload
MMDB ID: 250130
PDB Deposition Date: 2023/12/13
Updated in MMDB: 2024/08
Experimental Method:
x-ray diffraction
Resolution: 1.4  Å
Source Organism:
Similar Structures:
Biological Unit for 8RFR: trimeric; determined by author
Molecular Components in 8RFR
Label Count Molecule
Proteins (3 molecules)
3
Copper-containing Nitrite Reductase
(Gene symbol: nirK)
Molecule annotation
Chemicals and Non-standard biopolymers (36 molecules)
1
3
alpha-D-glucopyranosealpha-D-glucopyranose
2
3
beta-D-fructofuranosebeta-D-fructofuranose
3
6
COPPER (II) IONCOPPER (II) ION
4
6
NITRITE IONNITRITE ION
5
3
NITRIC OXIDENITRIC OXIDE
6
15
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303