8RDJ: Plastid-encoded RNA polymerase transcription elongation complex (Integrated model)

PDB ID: 8RDJDownload
MMDB ID: 244017
PDB Deposition Date: 2023/12/8
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 2.62  Å
Source Organism:
DNA molecule▼
Similar Structures:
Biological Unit for 8RDJ: 24-meric; determined by author and by software
Molecular Components in 8RDJ
Label Count Molecule
Proteins (21 molecules)
2
DNA-directed RNA Polymerase Subunit Alpha
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta'
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta''
Molecule annotation
1
Pap1
Molecule annotation
1
Pap2
Molecule annotation
1
Pap3
Molecule annotation
1
Pap4
Molecule annotation
1
Pap5
Molecule annotation
1
Pap6
Molecule annotation
1
Pap7
Molecule annotation
1
Pap8
Molecule annotation
1
Pap9
Molecule annotation
2
Pap10
Molecule annotation
1
Pap11
Molecule annotation
1
Pap12
Molecule annotation
1
Fln2
Molecule annotation
1
Ptac18
Molecule annotation
1
Prin2
Molecule annotation
Nucleotides(3 molecules)
1
DNA (81-mer)
Molecule annotation
1
DNA (81-mer)
Molecule annotation
1
RNA (40-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
ZINC IONZINC ION
3
2
FE (III) IONFE (III) ION
4
1
S-ADENOSYL-L-HOMOCYSTEINES-ADENOSYL-L-HOMOCYSTEINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303