8RCC: W-formate dehydrogenase from Desulfovibrio vulgaris - aerobic soaked with 48 bar CO2 for 1 min

PDB ID: 8RCCDownload
MMDB ID: 250125
PDB Deposition Date: 2023/12/6
Updated in MMDB: 2026/09
Experimental Method:
x-ray diffraction
Resolution: 2.301  Å
Source Organism:
Similar Structures:
Biological Unit for 8RCC: dimeric; determined by author and by software (PISA)
Molecular Components in 8RCC
Label Count Molecule
Proteins (2 molecules)
1
Formate Dehydrogenase, Alpha Subunit, Selenocysteine-containing
(Gene symbol: fdnG-1)
Molecule annotation
1
Formate Dehydrogenase, Beta Subunit, Putative
Molecule annotation
Chemicals and Non-standard biopolymers (39 molecules)
1
2
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE (Link to PubChem not yet available)2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
2
4
IRON/SULFUR CLUSTER (Link to PubChem not yet available)IRON/SULFUR CLUSTER
3
1
HYDROSULFURIC ACID (Link to PubChem not yet available)HYDROSULFURIC ACID
4
1
TUNGSTEN ION (Link to PubChem not yet available)TUNGSTEN ION
5
3
GLYCEROL (Link to PubChem not yet available)GLYCEROL
6
9
1,2-ETHANEDIOL (Link to PubChem not yet available)1,2-ETHANEDIOL
7
1
DI(HYDROXYETHYL)ETHER (Link to PubChem not yet available)DI(HYDROXYETHYL)ETHER
8
17
CARBON DIOXIDE (Link to PubChem not yet available)CARBON DIOXIDE
9
1
OXYGEN MOLECULE (Link to PubChem not yet available)OXYGEN MOLECULE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303