8RCB: W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Reoxidized by exposure to air (in a not degassed drop) for 34 min in the presence of Formate

PDB ID: 8RCBDownload
MMDB ID: 250124
PDB Deposition Date: 2023/12/6
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.11  Å
Source Organism:
Similar Structures:
Biological Unit for 8RCB: dimeric; determined by author and by software (PISA)
Molecular Components in 8RCB
Label Count Molecule
Proteins (2 molecules)
1
Formate Dehydrogenase, Alpha Subunit, Selenocysteine-containing
(Gene symbol: fdnG-1)
Molecule annotation
1
Formate Dehydrogenase, Beta Subunit, Putative
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
2
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
2
4
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
3
1
TUNGSTEN IONTUNGSTEN ION
4
1
HYDROSULFURIC ACIDHYDROSULFURIC ACID
5
2
GLYCEROLGLYCEROL
6
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
7
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
8
1
OXYGEN MOLECULEOXYGEN MOLECULE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303