8R9Y: S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments

PDB ID: 8R9YDownload
MMDB ID: 247902
PDB Deposition Date: 2023/11/30
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 3  Å
Source Organism:
Porcine deltacoronavirus▼
Similar Structures:
Biological Unit for 8R9Y: pentameric; determined by author and by software
Molecular Components in 8R9Y
Label Count Molecule
Proteins (5 molecules)
1
Spike Protein
Molecule annotation
1
67b12 Antibody Heavy Chain
Molecule annotation
1
67b12 Antibody Light Chain
Molecule annotation
1
42h3 Antibody Heavy Chain
Molecule annotation
1
42h3 Antibody Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
3
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303