8QRK: mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

PDB ID: 8QRKDownload
MMDB ID: 248886
PDB Deposition Date: 2023/10/9
Updated in MMDB: 2024/07
Experimental Method:
electron microscopy
Resolution: 6.69  Å
Source Organism:
Similar Structures:
Biological Unit for 8QRK: 30-meric; determined by author
Molecular Components in 8QRK
Label Count Molecule
Proteins (29 molecules)
1
28S Ribosomal Protein S34, Mitochondrial
(Gene symbol: MRPS34)
Molecule annotation
1
28S Ribosomal Protein S35, Mitochondrial
(Gene symbol: MRPS35)
Molecule annotation
1
Aurora Kinase A-interacting Protein
(Gene symbol: AURKAIP1)
Molecule annotation
1
28S Ribosomal Protein S2, Mitochondrial
(Gene symbol: MRPS2)
Molecule annotation
1
28S Ribosomal Protein S24, Mitochondrial
(Gene symbol: MRPS24)
Molecule annotation
1
28S Ribosomal Protein S6, Mitochondrial
(Gene symbol: MRPS6)
Molecule annotation
1
28S Ribosomal Protein S7, Mitochondrial
(Gene symbol: MRPS7)
Molecule annotation
1
28S Ribosomal Protein S10, Mitochondrial
(Gene symbol: MRPS10)
Molecule annotation
1
28S Ribosomal Protein S11, Mitochondrial
(Gene symbol: MRPS11)
Molecule annotation
1
28S Ribosomal Protein S12, Mitochondrial
(Gene symbol: MRPS12)
Molecule annotation
1
28S Ribosomal Protein S14, Mitochondrial
(Gene symbol: MRPS14)
Molecule annotation
1
28S Ribosomal Protein S15, Mitochondrial
(Gene symbol: MRPS15)
Molecule annotation
1
28S Ribosomal Protein S16, Mitochondrial
(Gene symbol: MRPS16)
Molecule annotation
1
28S Ribosomal Protein S17, Mitochondrial
(Gene symbol: MRPS17)
Molecule annotation
1
28S Ribosomal Protein S18b, Mitochondrial
(Gene symbol: MRPS18B)
Molecule annotation
1
28S Ribosomal Protein S18c, Mitochondrial
(Gene symbol: MRPS18C)
Molecule annotation
1
28S Ribosomal Protein S21, Mitochondrial
(Gene symbol: MRPS21)
Molecule annotation
1
28S Ribosomal Protein S22, Mitochondrial
(Gene symbol: MRPS22)
Molecule annotation
1
28S Ribosomal Protein S23, Mitochondrial
(Gene symbol: MRPS23)
Molecule annotation
1
28S Ribosomal Protein S25, Mitochondrial
(Gene symbol: MRPS25)
Molecule annotation
1
28S Ribosomal Protein S26, Mitochondrial
(Gene symbol: MRPS26)
Molecule annotation
1
28S Ribosomal Protein S28, Mitochondrial
(Gene symbol: MRPS28)
Molecule annotation
1
28S Ribosomal Protein S29, Mitochondrial
(Gene symbol: DAP3)
Molecule annotation
1
28S Ribosomal Protein S31, Mitochondrial
(Gene symbol: MRPS31)
Molecule annotation
1
28S Ribosomal Protein S33, Mitochondrial
(Gene symbol: MRPS33)
Molecule annotation
1
28S Ribosomal Protein S5, Mitochondrial
(Gene symbol: MRPS5)
Molecule annotation
1
28S Ribosomal Protein S9, Mitochondrial
(Gene symbol: MRPS9)
Molecule annotation
1
28S Ribosomal Protein S27, Mitochondrial
(Gene symbol: MRPS27)
Molecule annotation
1
Pentatricopeptide Repeat Domain-containing Protein 3, Mitochondrial
(Gene symbol: PTCD3)
Molecule annotation
Nucleotide(1 molecule)
1
12S Mitochondrial rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (74 molecules)
1
49
MAGNESIUM IONMAGNESIUM ION
2
1
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
1
SPERMINESPERMINE
4
1
STREPTOMYCINSTREPTOMYCIN
5
17
POTASSIUM IONPOTASSIUM ION
6
1
ZINC IONZINC ION
7
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
8
1
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
9
1
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303