National Center for
Biotechnology Information

8QBT: E. coli ApdP-stalled ribosomal complex

PDB ID:

8QBT Download

MMDB ID:

244304

PDB Deposition Date:

2023/8/25

Updated in MMDB:

2024/04

Experimental Method:

electron microscopy

Resolution:

2.2 Å

Source Organism:

Escherichia coli BW25113▼

Taxonomy	Molecule
Escherichia coli BW25113	A, B, C, D, E, F, G, H, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, i, j, m, n, o , p, q, s, t, u, v, w, y, z, 1, 2, 3, 5, 6, 7, e
Sinorhizobium medicae	4, f

Similar Structures:

Biological Unit for 8QBT: 52-meric; determined by author and by software

Molecular Components in 8QBT
Label	Count	Molecule
Proteins (45 molecules)
C	1	Large Ribosomal Subunit Protein UL2
D	1	50S Ribosomal Protein L3
E	1	Large Ribosomal Subunit Protein UL4
F	1	Large Ribosomal Subunit Protein UL5
G	1	Large Ribosomal Subunit Protein UL6
H	1	Large Ribosomal Subunit Protein BL9
J	1	Large Ribosomal Subunit Protein Ul13
K	1	Large Ribosomal Subunit Protein Ul14
L	1	50S Ribosomal Protein L15
M	1	50S Ribosomal Protein L16
N	1	Large Ribosomal Subunit Protein Bl17
O	1	Large Ribosomal Subunit Protein Ul18
P	1	Large Ribosomal Subunit Protein Bl19
Q	1	Large Ribosomal Subunit Protein Bl20
R	1	Large Ribosomal Subunit Protein Bl21
S	1	Large Ribosomal Subunit Protein Ul22
T	1	Large Ribosomal Subunit Protein Ul23
U	1	Large Ribosomal Subunit Protein Ul24
V	1	50S Ribosomal Protein L25
W	1	Large Ribosomal Subunit Protein Bl27
X	1	Large Ribosomal Subunit Protein Bl28
Y	1	Large Ribosomal Subunit Protein Ul29
Z	1	Large Ribosomal Subunit Protein Ul30
a	1	Large Ribosomal Subunit Protein Bl32
b	1	Large Ribosomal Subunit Protein Bl33
c	1	Large Ribosomal Subunit Protein Bl34
d	1	Large Ribosomal Subunit Protein Bl35
j	1	30S Ribosomal Protein S2
m	1	Small Ribosomal Subunit Protein US5
n	1	30S Ribosomal Protein S6, Fully Modified Isoform
o	1	30S Ribosomal Protein S7
p	1	Small Ribosomal Subunit Protein US8
q	1	Small Ribosomal Subunit Protein US9
s	1	30S Ribosomal Protein S11
t	1	30S Ribosomal Protein S12
u	1	Small Ribosomal Subunit Protein Us13
v	1	Small Ribosomal Subunit Protein Us14
w	1	Small Ribosomal Subunit Protein Us15
y	1	Small Ribosomal Subunit Protein Us17
z	1	Small Ribosomal Subunit Protein Bs18
1	1	Small Ribosomal Subunit Protein Us19
2	1	30S Ribosomal Protein S20
3	1	Small Ribosomal Subunit Protein Bs21
e	1	Large Ribosomal Subunit Protein Bl36a
f	1	Apdp Nascent Chain
Nucleotides(7 molecules)
A	1	23S rRNA
B	1	5S rRNA
i	1	16S rRNA
4	1	mRNA
5 6	2	Pro-trna
7	1	Ala-trna
Chemicals and Non-standard biopolymers (377 molecules)
1	248	MAGNESIUM ION
2	127	POTASSIUM ION
3	1	PROLINE
4	1	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303