8PSZ: Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation)

PDB ID: 8PSZDownload
MMDB ID: 241073
PDB Deposition Date: 2023/7/13
Updated in MMDB: 2024/01
Experimental Method:
electron microscopy
Resolution: 2.42  Å
Source Organism:
Similar Structures:
Biological Unit for 8PSZ: heptameric; determined by author and by software (PISA)
Molecular Components in 8PSZ
Label Count Molecule
Proteins (3 molecules)
1
Polymerase Acidic Protein (Pa-like)
Molecule annotation
1
Putative PB1
Molecule annotation
1
RNA-dependent RNA Polymerase
Molecule annotation
Nucleotides(4 molecules)
3
5' Vrna END - Vrna Loop (40-mer)
Molecule annotation
1
Transcription-like Product
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
3
ZINC IONZINC ION
2
1
[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid
3
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303