8PP6: human RYBP-PRC1 bound to H2AK118ub1 nucleosome

PDB ID: 8PP6Download
MMDB ID: 244919
PDB Deposition Date: 2023/7/6
Updated in MMDB: 2024/08
Experimental Method:
electron microscopy
Resolution: 3.18  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 8PP6: dodecameric; determined by author and by software
Molecular Components in 8PP6
Label Count Molecule
Proteins (10 molecules)
2
Histone H3 (Fragment)
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A
Molecule annotation
2
Histone H2B
Molecule annotation
1
Ring1 and Yy1-binding Protein
Molecule annotation
1
Ubiquitin-40s Ribosomal Protein S27a (Fragment)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (215-mer)
Molecule annotation
1
DNA (215-mer)
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303