8POT: Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation

PDB ID: 8POTDownload
MMDB ID: 248169
PDB Deposition Date: 2023/7/5
Updated in MMDB: 2024/07
Experimental Method:
x-ray diffraction
Resolution: 2.149  Å
Source Organism:
Similar Structures:
Biological Unit for 8POT: dimeric; determined by author and by software (PISA)
Molecular Components in 8POT
Label Count Molecule
Protein (1 molecule)
1
Leucine--trna Ligase
Molecule annotation
Nucleotide(1 molecule)
1
tRNA(leu)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
[(1R,3'S,5S,6R,8R)-3'-(aminomethyl)-8-(6-aminopurin-9-yl)-4'-bromanyl-7'-[3-[methyl-(phenylmethyl)amino]propoxy]spiro[2,4,7-trioxa-3$l^{4}-borabicyclo[3.3.0]octane-3,1'-3H-2,1$l^{4}-benzoxaborole]-6-yl]methyl dihydrogen phosphate[(1R,3'S,5S,6R,8R)-3'-(aminomethyl)-8-(6-aminopurin-9-yl)-4'-bromanyl-7'-[3-[methyl-(phenylmethyl)amino]propoxy]spiro[2,4,7-trioxa-3$l^{4}-borabicyclo[3.3.0]octane-3,1'-3H-2,1$l^{4}-benzoxaborole]-6-yl]methyl dihydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303