8PDY: E. coli RNA polymerase paused at ops site

PDB ID: 8PDYDownload
MMDB ID: 245798
PDB Deposition Date: 2023/6/13
Updated in MMDB: 2024/04
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 8PDY: octameric; determined by author
Molecular Components in 8PDY
Label Count Molecule
Proteins (5 molecules)
2
DNA-directed RNA Polymerase Subunit Alpha
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta'
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Omega
Molecule annotation
Nucleotides(3 molecules)
1
RNA (5'-r(p*up*gp*gp*cp*gp*gp*up*ap*gp*cp*gp*u)-3')
Molecule annotation
1
Non-template DNA (35-mer)
Molecule annotation
1
Template DNA (35-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303