8PD6: Crystal structure of the TRIM58 PRY-SPRY domain in complex with TRIM-473

PDB ID: 8PD6Download
MMDB ID: 242007
PDB Deposition Date: 2023/6/11
Updated in MMDB: 2024/02
Experimental Method:
x-ray diffraction
Resolution: 1.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8PD6: monomeric; determined by author and by software (PISA)
Molecular Components in 8PD6
Label Count Molecule
Protein (1 molecule)
1
E3 Ubiquitin-protein Ligase Trim58
(Gene symbol: TRIM58)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
~{N}2-[3-(dimethylamino)propyl]-6-phenyl-~{N}4-(piperidin-4-ylmethyl)quinazoline-2,4-diamine~{N}2-[3-(dimethylamino)propyl]-6-phenyl-~{N}4-(piperidin-4-ylmethyl)quinazoline-2,4-diamine
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
CHLORIDE IONCHLORIDE ION
4
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303