8P09: 48S late-stage initiation complex with non methylated mRNA

PDB ID: 8P09Download
MMDB ID: 244276
PDB Deposition Date: 2023/5/9
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8P09: 40-meric; determined by author and by software (PISA)
Molecular Components in 8P09
Label Count Molecule
Proteins (37 molecules)
1
Eukaryotic Translation Initiation Factor 2 Subunit 1
Molecule annotation
1
40S Ribosomal Protein SA
(Gene symbol: RPSA)
Molecule annotation
1
Ribosomal Protein ES1
Molecule annotation
1
40S Ribosomal Protein S2
Molecule annotation
1
Ribosomal Protein S3
(Gene symbol: RPS3)
Molecule annotation
1
40S Ribosomal Protein S4
(Gene symbol: LOC100338112)
Molecule annotation
1
Ribosomal Protein S5
Molecule annotation
1
40S Ribosomal Protein S6
Molecule annotation
1
Ribosomal Protein ES7
(Gene symbol: RPS7)
Molecule annotation
1
40S Ribosomal Protein S8
(Gene symbol: RPS8)
Molecule annotation
1
40S Ribosomal Protein S9
(Gene symbol: RPS9)
Molecule annotation
1
40S Ribosomal Protein Es10
Molecule annotation
1
40S Ribosomal Protein S11
Molecule annotation
1
40S Ribosomal Protein S12
(Gene symbol: RPS12)
Molecule annotation
1
Ribosomal Protein Us15
(Gene symbol: RPS13)
Molecule annotation
1
40S Ribosomal Protein Us11
(Gene symbol: RPS14)
Molecule annotation
1
40S Ribosomal Protein Us19
Molecule annotation
1
40S Ribosomal Protein US9
(Gene symbol: RPS16)
Molecule annotation
1
40S Ribosomal Protein Es17
(Gene symbol: RPS17)
Molecule annotation
1
40S Ribosomal Protein Us13
(Gene symbol: RPS18)
Molecule annotation
1
40S Ribosomal Protein Es19
(Gene symbol: LOC100345774)
Molecule annotation
1
40S Ribosomal Protein Us10
(Gene symbol: RPS20)
Molecule annotation
1
40S Ribosomal Protein S21
(Gene symbol: RPS21)
Molecule annotation
1
Ribosomal Protein S15a
(Gene symbol: RPS15A)
Molecule annotation
1
40S Ribosomal Protein S23
(Gene symbol: LOC100346439)
Molecule annotation
1
40S Ribosomal Protein S24
Molecule annotation
1
40S Ribosomal Protein S26
(Gene symbol: LOC100346996)
Molecule annotation
1
40S Ribosomal Protein S27
(Gene symbol: LOC100345694)
Molecule annotation
1
40S Ribosomal Protein S28
(Gene symbol: RPS28)
Molecule annotation
1
40S Ribosomal Protein S29
(Gene symbol: RPS29)
Molecule annotation
1
Ribosomal Protein Es31
(Gene symbol: LOC100348379)
Molecule annotation
1
Ribosomal Protein Rack1
(Gene symbol: RACK1)
Molecule annotation
1
40S Ribosomal Protein S30
(Gene symbol: FAU)
Molecule annotation
1
Eukaryotic Translation Initiation Factor 4C
Molecule annotation
1
ATP Binding Cassette Subfamily E Member 1
Molecule annotation
1
60S Ribosomal Protein L41
Molecule annotation
1
40S Ribosomal Protein S25
(Gene symbol: RPS25)
Molecule annotation
Nucleotides(3 molecules)
1
Initiator Methionylated tRNA
Molecule annotation
1
18S Ribosomal RNA
Molecule annotation
1
mRNA
Molecule annotation
Chemicals and Non-standard biopolymers (230 molecules)
1
230
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303