8OZG: cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1

PDB ID: 8OZGDownload
MMDB ID: 234322
PDB Deposition Date: 2023/5/9
Updated in MMDB: 2023/08
Experimental Method:
electron microscopy
Resolution: 3.37  Å
Source Organism:
Similar Structures:
Biological Unit for 8OZG: hexadecameric; determined by author and by software (PISA)
Molecular Components in 8OZG
Label Count Molecule
Proteins (8 molecules)
4
TIR Domain-containing Protein
Molecule annotation
4
Piwi Domain-containing Protein
Molecule annotation
Nucleotides(8 molecules)
4
RNA (5'-r(p*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*u)-3')
Molecule annotation
4
DNA (5'-d(*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303